CV

Education

Ph.D in Version Control Theory, GitHub University, 2018 (expected)
M.S. in Jekyll, GitHub University, 2014
B.S. in GitHub, GitHub University, 2012

Work experience

Spring 2024: Academic Pages Collaborator
- GitHub University
- Duties includes: Updates and improvements to template
- Supervisor: The Users
Fall 2015: Research Assistant
- GitHub University
- Duties included: Merging pull requests
- Supervisor: Professor Hub
Summer 2015: Research Assistant
- GitHub University
- Duties included: Tagging issues
- Supervisor: Professor Git

Skills

Skill 1
Skill 2
- Sub-skill 2.1
- Sub-skill 2.2
- Sub-skill 2.3
Skill 3

Publications

A variational deep-learning approach to modeling memory T cell dynamics.

van Dorp, CH. et al. (2025). "A variational deep-learning approach to modeling memory T cell dynamics." PLOS Computational Biology. 21(7): e1013242.

Tissue resident memory CD4+ T cells are sustained by site-specific levels of self-renewal and continuous replacement

Chandler J. et al (2025). "Tissue resident memory CD4+ T cells are sustained by site-specific levels of self-renewal and continuous replacement." eLife.

Retrospective evaluation of school-related measures on pre-vaccination transmission dynamics of SARS-CoV-2.

Canfora B. et al. (2025). "Retrospective evaluation of school-related measures on pre-vaccination transmission dynamics of SARS-CoV-2." BioRxiv.

The dynamics and longevity of circulating CD4+ memory T cells depend on cell age and not the chronological age of the host

Bullock, ME. et al (2024). "The dynamics and longevity of circulating CD4+ memory T cells depend on cell age and not the chronological age of the host." Plos Biology. 22(8): e3002380.

Induction of durable remission by combination immunotherapy in SHIV infected, ART-suppressed macaques.

Lim, SY. et al (2024). "Induction of durable remission by combination immunotherapy in SHIV infected, ART-suppressed macaques." Science. 383,1104-1111.

Estimation of introduction and transmission rates of SARS-CoV-2 in a prospective household study

van Boven, M. et al (2024). "Estimation of introduction and transmission rates of SARS-CoV-2 in a prospective household study." Plos Computational Biology. 20(1): e1011832.

Numerical methods and hypoexponential approximations for gamma distributed delay differential equations

Cassidy T. et al (2022). "Numerical methods and hypoexponential approximations for gamma distributed delay differential equations." IMA Journal of Applied Mathematics. 87(6): 1043–1089.

Global estimates of the fitness advantage of SARS-CoV-2 variant Omicron

van Dorp CH. et al (2022). "Global estimates of the fitness advantage of SARS-CoV-2 variant Omicron." Virus Evolution. 8(2): veac089.

Estimating the strength of selection for new SARS-CoV-2 variants

van Dorp CH. et al (2021). "Estimating the strength of selection for new SARS-CoV-2 variants." Nature Communications 12, 7239.

Controlling the pandemic during the SARS-CoV-2 vaccination rollout

Viana J et al (2021). "Controlling the pandemic during the SARS-CoV-2 vaccination rollout." Nature Communications 12, 3674.

A Participant-Derived Xenograft Model of HIV Enables Long-Term Evaluation of Autologous Immunotherapies

McCann CD (2021). "A Participant-Derived Xenograft Model of HIV Enables Long-Term Evaluation of Autologous Immunotherapies." Journal of Experimental Medicine. 218(7): e20201908.

Model-based evaluation of school- and non-school-related measures to control the COVID-19 pandemic

Rozhnova G et al (2021). "Model-based evaluation of school- and non-school-related measures to control the COVID-19 pandemic." Nature Communications 12, 1614.

Models of SIV rebound after treatment interruption that involve multiple reactivation events

van Dorp, CH. et al (2020). "Models of SIV rebound after treatment interruption that involve multiple reactivation events." PLOS Computational Biology. 16(10): e1008241.

Estimating Transmission Parameters for Respiratory Syncytial Virus and Predicting the Impact of Maternal and Pediatric Vaccination

van Boven, M et al (2020). "Estimating Transmission Parameters for Respiratory Syncytial Virus and Predicting the Impact of Maternal and Pediatric Vaccination." The Journal of Infectious Diseases. 222(Supplement_7): S688–S694.

Infectious reactivation of cytomegalovirus explaining age- and sex-specific patterns of seroprevalence

van Boven, M et al (2017). "Infectious reactivation of cytomegalovirus explaining age- and sex-specific patterns of seroprevalence." PLOS Computational Biology. 13(9): e1005719.

Long-term adaptation of the influenza A virus by escaping cytotoxic T-cell recognition

Woolthuis, RG et al (2016). "Long-term adaptation of the influenza A virus by escaping cytotoxic T-cell recognition." Scientific Reports. 6: 33334.

Immuno-epidemiological Modeling of HIV-1 Predicts High Heritability of the Set-Point Virus Load, while Selection for CTL Escape Dominates Virulence Evolution

van Dorp, CH. et al (2014). "Immuno-epidemiological Modeling of HIV-1 Predicts High Heritability of the Set-Point Virus Load, while Selection for CTL Escape Dominates Virulence Evolution." PLOS Computational Biology. 10(12): e1003899.

Chris

CV